PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008977m
Common NameCARUB_v10008977mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 488aa    MW: 53322.8 Da    PI: 7.7046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008977mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.5e-30187246159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+
  Carubv10008977m 187 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAaSCPVRKQVQRCSEDMSILISTYEGTHNHP 246
                      58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-31172248IPR003657WRKY domain
SuperFamilySSF1182901.09E-26180248IPR003657WRKY domain
PROSITE profilePS5081128.529182248IPR003657WRKY domain
SMARTSM007741.1E-34187247IPR003657WRKY domain
PfamPF031065.5E-26188246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEEAKEENRR LKSSLSKIKK DFDILQTQYN QLMVQHEEPK HISSKGHHQD KDKVSEREEL  60
VSLSLGRGLK SLFQPSGSMK NKEEKNKDIM EEAGDDKKID GHEKGSEQGL SVAFEYKDLS  120
NPNEKFDHKK ETISLEIGSN NKTPSENSFG FKNDEDDHQE DQEELLPQNL VKKTRVSVRS  180
RCETPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTIAASCP VRKQVQRCSE DMSILISTYE  240
GTHNHPLPMS ATAMASATSA AASMLLSGTS SSSSSSVAAS DLHGLNFSLS GNNINPKSNS  300
PFLQTSSSPS SSGHPTITLD LTASSSSQQP FLSMLNRFSS PTSNVSRSNS YPSTNLNFSN  360
NTNTLQNWSG GGGILSNQYR APYGNISTHQ QSPYQSIIQT RTVGSSFDPF GRSASSSSSH  420
PTQSNHDHIG IKNITTHQVP SLPAETIKAI TTDPNFQSAL ATALSSIIGG DLKIDHKVNR  480
SDAEKSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19174248174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307358.10.0hypothetical protein CARUB_v10008977mg
SwissprotQ8VWV60.0WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBLR0GWQ90.0R0GWQ9_9BRAS; Uncharacterized protein
STRINGAT1G18860.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126631729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.10.0WRKY DNA-binding protein 61